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dc.creatorPajić, Vesna S.
dc.creatorPavlović-Lažetić, Gordana
dc.creatorBeljanski, Milos V.
dc.creatorBrandt, Bernd W.
dc.creatorPajić, Miloš
dc.date.accessioned2020-12-17T20:48:51Z
dc.date.available2020-12-17T20:48:51Z
dc.date.issued2013
dc.identifier.issn1748-5673
dc.identifier.urihttp://aspace.agrif.bg.ac.rs/handle/123456789/3280
dc.description.abstractTo associate phenotypic characteristics of an organism to molecules encoded by its genome, there is a need for well-structured genotype and phenotype data. We use a novel method for extracting data on phenotype and genotype characteristics of microorganisms from text. As a resource, we use an encyclopedia of microorganisms, which holds phenotypic and genotypic data and create a structured, flexible data resource, which can be exported to a range of database formats, containing genotype and phenotype data for 2412 species and 873 genera of microbes. This data source has great potential as a resource for future biological research on genotype-phenotype associations. In this paper, we focus on describing the structure and content of the resulting database and on evaluating the method used for extracting the data. We conclude that the resulting database can be used as a reliable complementary resource for research into genotype-phenotype association.en
dc.publisherInderscience Enterprises Ltd, Geneva
dc.relationinfo:eu-repo/grantAgreement/MESTD/Basic Research (BR or ON)/174021/RS//
dc.rightsrestrictedAccess
dc.sourceInternational Journal of Data Mining and Bioinformatics
dc.subjectbiological databaseen
dc.subjectbioinformaticsen
dc.subjectgenotype-phenotype associationen
dc.subjecttext miningen
dc.subjectinformation extractionen
dc.subjectknowledge acquisitionen
dc.subjectknowledge discoveryen
dc.subjectunstructured textual resourcesen
dc.titleTowards a database for genotype-phenotype association research: mining data from encyclopaediaen
dc.typearticle
dc.rights.licenseARR
dc.citation.epage213
dc.citation.issue2
dc.citation.other7(2): 196-213
dc.citation.rankM23
dc.citation.spage196
dc.citation.volume7
dc.identifier.doi10.1504/IJDMB.2013.053196
dc.identifier.rcubconv_5098
dc.identifier.scopus2-s2.0-84876257326
dc.identifier.pmid23777176
dc.identifier.wos000317486500007
dc.type.versionpublishedVersion


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