TY  - JOUR
AU  - Schiavo, G.
AU  - Bovo, S.
AU  - Munoz, M.
AU  - Ribani, A.
AU  - Alves, E.
AU  - Araujo, J. P.
AU  - Bozzi, R.
AU  - Čandek-Potokar, M.
AU  - Charneca, R.
AU  - Fernandez, A. I.
AU  - Gallo, M.
AU  - Garcia, F.
AU  - Karolyi, D.
AU  - Kušec, G.
AU  - Martins, J. M.
AU  - Mercat, M.-J.
AU  - Nunez, Y.
AU  - Quintanilla, R.
AU  - Radović, C.
AU  - Razmaite, V.
AU  - Riquet, J.
AU  - Savić, R.
AU  - Usai, G.
AU  - Utzeri, V. J.
AU  - Zimmer, C.
AU  - Ovilo, C.
AU  - Fontanesi, L.
PY  - 2021
UR  - http://aspace.agrif.bg.ac.rs/handle/123456789/5804
AB  - ROHs are long stretches of DNA homozygous at each polymorphic position. The proportion of
genome covered by ROHs and their length are indicators of the level and origin of inbreeding.
Frequent commonROHs withinthe samepopulationdefineROHislandsand indicatehotspots of
selection. In this work, we investigated ROHs in a total of 1131 pigs from20 European local pig
breeds and in three cosmopolitan breeds, genotyped with the GGP PorcineHDGenomic Profiler.
PLINK software was used to identify ROHs. Size classes and genomic inbreeding parameters were
evaluated. ROH islands were defined by evaluating different thresholds of homozygous SNP
frequency. A functional overview of breed-specific ROH islands was obtained via overrepresentation
analyses of GO biological processes. Mora Romagnola and Turopolje breeds had
the largest proportions of genome covered with ROH (~1003 and ~955 Mb respectively),
whereas Nero Siciliano and Sarda breeds had the lowest proportions (~207 and 247 Mb
respectively). The highest proportion of long ROH (>16 Mb) was in Apulo-Calabrese, Mora
Romagnola and Casertana. The largest number of ROH islands was identified in the Italian
Landrace (n=32), Cinta Senese (n=26) and LithuanianWhite Old Type (n=22) breeds. Several
ROH islands were in regions encompassing genes known to affect morphological traits.
Comparative ROH structure analysis among breeds indicated the similar genetic structure of
local breeds across Europe. This study contributed to understanding of the genetic history of
PB  - Blackwell Publishing Ltd
T2  - Animal Genetics
T1  - Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds
DO  - 10.1111/age.13045
ER  - 

@article{
author = "Schiavo, G. and Bovo, S. and Munoz, M. and Ribani, A. and Alves, E. and Araujo, J. P. and Bozzi, R. and Čandek-Potokar, M. and Charneca, R. and Fernandez, A. I. and Gallo, M. and Garcia, F. and Karolyi, D. and Kušec, G. and Martins, J. M. and Mercat, M.-J. and Nunez, Y. and Quintanilla, R. and Radović, C. and Razmaite, V. and Riquet, J. and Savić, R. and Usai, G. and Utzeri, V. J. and Zimmer, C. and Ovilo, C. and Fontanesi, L.",
year = "2021",
abstract = "ROHs are long stretches of DNA homozygous at each polymorphic position. The proportion of
genome covered by ROHs and their length are indicators of the level and origin of inbreeding.
Frequent commonROHs withinthe samepopulationdefineROHislandsand indicatehotspots of
selection. In this work, we investigated ROHs in a total of 1131 pigs from20 European local pig
breeds and in three cosmopolitan breeds, genotyped with the GGP PorcineHDGenomic Profiler.
PLINK software was used to identify ROHs. Size classes and genomic inbreeding parameters were
evaluated. ROH islands were defined by evaluating different thresholds of homozygous SNP
frequency. A functional overview of breed-specific ROH islands was obtained via overrepresentation
analyses of GO biological processes. Mora Romagnola and Turopolje breeds had
the largest proportions of genome covered with ROH (~1003 and ~955 Mb respectively),
whereas Nero Siciliano and Sarda breeds had the lowest proportions (~207 and 247 Mb
respectively). The highest proportion of long ROH (>16 Mb) was in Apulo-Calabrese, Mora
Romagnola and Casertana. The largest number of ROH islands was identified in the Italian
Landrace (n=32), Cinta Senese (n=26) and LithuanianWhite Old Type (n=22) breeds. Several
ROH islands were in regions encompassing genes known to affect morphological traits.
Comparative ROH structure analysis among breeds indicated the similar genetic structure of
local breeds across Europe. This study contributed to understanding of the genetic history of",
publisher = "Blackwell Publishing Ltd",
journal = "Animal Genetics",
title = "Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds",
doi = "10.1111/age.13045"
}

Schiavo, G., Bovo, S., Munoz, M., Ribani, A., Alves, E., Araujo, J. P., Bozzi, R., Čandek-Potokar, M., Charneca, R., Fernandez, A. I., Gallo, M., Garcia, F., Karolyi, D., Kušec, G., Martins, J. M., Mercat, M.-J., Nunez, Y., Quintanilla, R., Radović, C., Razmaite, V., Riquet, J., Savić, R., Usai, G., Utzeri, V. J., Zimmer, C., Ovilo, C.,& Fontanesi, L.. (2021). Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds. in Animal Genetics
Blackwell Publishing Ltd..
https://doi.org/10.1111/age.13045

Schiavo G, Bovo S, Munoz M, Ribani A, Alves E, Araujo JP, Bozzi R, Čandek-Potokar M, Charneca R, Fernandez AI, Gallo M, Garcia F, Karolyi D, Kušec G, Martins JM, Mercat M, Nunez Y, Quintanilla R, Radović C, Razmaite V, Riquet J, Savić R, Usai G, Utzeri VJ, Zimmer C, Ovilo C, Fontanesi L. Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds. in Animal Genetics. 2021;.
doi:10.1111/age.13045 .

Schiavo, G., Bovo, S., Munoz, M., Ribani, A., Alves, E., Araujo, J. P., Bozzi, R., Čandek-Potokar, M., Charneca, R., Fernandez, A. I., Gallo, M., Garcia, F., Karolyi, D., Kušec, G., Martins, J. M., Mercat, M.-J., Nunez, Y., Quintanilla, R., Radović, C., Razmaite, V., Riquet, J., Savić, R., Usai, G., Utzeri, V. J., Zimmer, C., Ovilo, C., Fontanesi, L., "Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds" in Animal Genetics (2021),
https://doi.org/10.1111/age.13045 . .

TY  - CONF
AU  - Radović, V.I.
AU  - Luković, Z
AU  - Radović, C
AU  - Radojković, Dragan
AU  - Božić, A
AU  - Ivanić, D
PY  - 2014
UR  - http://aspace.agrif.bg.ac.rs/handle/123456789/5548
AB  - The study was conducted on 700 fattening pigs, three breed half blood with Duroc as a terminal breed ((Large White x Landrace) x Duroc). The pigs were divided into the  two groups according to diet: dry and liquid nutrition. Each group consisted of 350 fattening pigs and used the same feed mixtures in prefattening (CP-3) and fattening (ST). During the period from 24.8 to 60kg they were fed with a CP-3, a crude protein content of 16.37%. During the period from 60kg until the end they were fed with ST, a crude protein content of 15.3%. Muscle tissue processed half-carcasses in slaughterhouses were determined by a device that determines the value of S (fat thickness) and M (muscle thickness) using "method one point." Fat thickness skin in mm, measured 7 cm lateral to the central (median) cutting, in the amount between the second and third ribs of the tail. The thickness of the muscle in mm was measured at the same place as the thickness of the bacon. The results show that the fatling fed dry food had significantly higher carcass weight (80.41: 78.51 kg, p lt 0.05), backfat thickness (16.55: 15.31 mm, p lt 0.05), weight (muscle 55.80: 53.82, p lt 0.05), but a lower percentage of meat (56.6: 57.3, p lt 0.05) as compared to pigs fed liquid food. In finishing pigs fed dry food, between carcass weight and backfat thickness and muscle thickness a positive and significant correlation (0.4267 and 0.4290, p lt 0.05) was found and between carcass weight and lean meat a significant negative correlation (-0. 4236 and p lt 0.05). Between backfat thickness and lean meat in the carcass a negative and significant correlation (-0.8534, p lt 0.05) was found and between muscle thickness and lean meat a positive and significant correlation (0.2857, p lt 0.05). In finishing pigs fed liquid food, between carcass weight and backfat thickness and muscle thickness a positive and significant correlation (0.1800 and 0.3705, p lt 0.05) was found and between carcass weight and lean meat a significant negative correlation (-0. 2178; p  lt 0.05). Between backfat thickness and percentage of meat in the carcass negative and significant correlation (-0.8692, p lt 0.05) was found and between muscle thickness and lean meat a positive and significant correlation (0.3168, p lt 0.05).
C3  - International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia
T1  - The Influence of Fatteners Dry and Liquid Diet on Slaughter Traits of Carcass Sides
UR  - https://hdl.handle.net/21.15107/rcub_agrospace_5548
ER  - 

@conference{
author = "Radović, V.I. and Luković, Z and Radović, C and Radojković, Dragan and Božić, A and Ivanić, D",
year = "2014",
abstract = "The study was conducted on 700 fattening pigs, three breed half blood with Duroc as a terminal breed ((Large White x Landrace) x Duroc). The pigs were divided into the  two groups according to diet: dry and liquid nutrition. Each group consisted of 350 fattening pigs and used the same feed mixtures in prefattening (CP-3) and fattening (ST). During the period from 24.8 to 60kg they were fed with a CP-3, a crude protein content of 16.37%. During the period from 60kg until the end they were fed with ST, a crude protein content of 15.3%. Muscle tissue processed half-carcasses in slaughterhouses were determined by a device that determines the value of S (fat thickness) and M (muscle thickness) using "method one point." Fat thickness skin in mm, measured 7 cm lateral to the central (median) cutting, in the amount between the second and third ribs of the tail. The thickness of the muscle in mm was measured at the same place as the thickness of the bacon. The results show that the fatling fed dry food had significantly higher carcass weight (80.41: 78.51 kg, p lt 0.05), backfat thickness (16.55: 15.31 mm, p lt 0.05), weight (muscle 55.80: 53.82, p lt 0.05), but a lower percentage of meat (56.6: 57.3, p lt 0.05) as compared to pigs fed liquid food. In finishing pigs fed dry food, between carcass weight and backfat thickness and muscle thickness a positive and significant correlation (0.4267 and 0.4290, p lt 0.05) was found and between carcass weight and lean meat a significant negative correlation (-0. 4236 and p lt 0.05). Between backfat thickness and lean meat in the carcass a negative and significant correlation (-0.8534, p lt 0.05) was found and between muscle thickness and lean meat a positive and significant correlation (0.2857, p lt 0.05). In finishing pigs fed liquid food, between carcass weight and backfat thickness and muscle thickness a positive and significant correlation (0.1800 and 0.3705, p lt 0.05) was found and between carcass weight and lean meat a significant negative correlation (-0. 2178; p  lt 0.05). Between backfat thickness and percentage of meat in the carcass negative and significant correlation (-0.8692, p lt 0.05) was found and between muscle thickness and lean meat a positive and significant correlation (0.3168, p lt 0.05).",
journal = "International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia",
title = "The Influence of Fatteners Dry and Liquid Diet on Slaughter Traits of Carcass Sides",
url = "https://hdl.handle.net/21.15107/rcub_agrospace_5548"
}

Radović, V.I., Luković, Z., Radović, C., Radojković, D., Božić, A.,& Ivanić, D.. (2014). The Influence of Fatteners Dry and Liquid Diet on Slaughter Traits of Carcass Sides. in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia.
https://hdl.handle.net/21.15107/rcub_agrospace_5548

Radović V, Luković Z, Radović C, Radojković D, Božić A, Ivanić D. The Influence of Fatteners Dry and Liquid Diet on Slaughter Traits of Carcass Sides. in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia. 2014;.
https://hdl.handle.net/21.15107/rcub_agrospace_5548 .

Radović, V.I., Luković, Z, Radović, C, Radojković, Dragan, Božić, A, Ivanić, D, "The Influence of Fatteners Dry and Liquid Diet on Slaughter Traits of Carcass Sides" in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia (2014),
https://hdl.handle.net/21.15107/rcub_agrospace_5548 .

TY  - CONF
AU  - Radojković, Dragan
AU  - Petrović, M
AU  - Parunović, N
AU  - Radović, C
AU  - Radović, L
AU  - Popovac, Mladen
AU  - Savić, Radomir
AU  - Gogić, M
PY  - 2014
UR  - http://aspace.agrif.bg.ac.rs/handle/123456789/5542
AB  - Variance components for sow litter size traits were estimated using the REML method. Number of live born piglets (NBA), number of still born piglets (NSB), number of total born piglets (NTB) and number of weaned piglets (NW) were treated as traits which repeated several times during sow lifetime - repeatability model. Results of the fertility of Swedish Landrace sows realized on three pig farms in the Republic of Serbia were presented in four data sets DS1 (farm 1), DS2 (farm 2), DS3 (farm 3) and DS23 (farms 2 and 3 together). Fixed part of the model for litter size traits at farrowing (NBA, NSB and NTB) included parity, mating season as year-month interaction, litter genotype and weaning to conception interval as class effects. The age at farrowing was modelled as a quadratic regression nested within parity, whereas preceding lactation length was included as linear regression.  In case of NW the model included parity, weaning season as year-month interaction, number of piglets in litter subsequent to crossfostering and litter genotype as class effects. The age at farrowing was included into the model in the same way as in case of previous traits. Random part of the model was the same for all analysed traits and represented as effect of common environment in litter where sows had been born, permanent effect of environment in sows’ litters and direct additive genetic effect. Heritability of NBA varied between 0.050 (DS2) and 0.076 (DS3), NSB between 0.004 (DS3) and 0.027 (DS2), NTB between 0.065 (DS2) and 0.073 (DS3) and of NW between 0.010 (DS2) and 0.028 (DS1). Share of permanent environment of sow in phenotypic variance was higher than share of litter effect and mostly lower than share of direct genetic effect.
C3  - International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia
T1  - Estimation of the Variance Components of the Sow Litter Size Traits Using Reml Method - Repeatability Model
UR  - https://hdl.handle.net/21.15107/rcub_agrospace_5542
ER  - 

@conference{
author = "Radojković, Dragan and Petrović, M and Parunović, N and Radović, C and Radović, L and Popovac, Mladen and Savić, Radomir and Gogić, M",
year = "2014",
abstract = "Variance components for sow litter size traits were estimated using the REML method. Number of live born piglets (NBA), number of still born piglets (NSB), number of total born piglets (NTB) and number of weaned piglets (NW) were treated as traits which repeated several times during sow lifetime - repeatability model. Results of the fertility of Swedish Landrace sows realized on three pig farms in the Republic of Serbia were presented in four data sets DS1 (farm 1), DS2 (farm 2), DS3 (farm 3) and DS23 (farms 2 and 3 together). Fixed part of the model for litter size traits at farrowing (NBA, NSB and NTB) included parity, mating season as year-month interaction, litter genotype and weaning to conception interval as class effects. The age at farrowing was modelled as a quadratic regression nested within parity, whereas preceding lactation length was included as linear regression.  In case of NW the model included parity, weaning season as year-month interaction, number of piglets in litter subsequent to crossfostering and litter genotype as class effects. The age at farrowing was included into the model in the same way as in case of previous traits. Random part of the model was the same for all analysed traits and represented as effect of common environment in litter where sows had been born, permanent effect of environment in sows’ litters and direct additive genetic effect. Heritability of NBA varied between 0.050 (DS2) and 0.076 (DS3), NSB between 0.004 (DS3) and 0.027 (DS2), NTB between 0.065 (DS2) and 0.073 (DS3) and of NW between 0.010 (DS2) and 0.028 (DS1). Share of permanent environment of sow in phenotypic variance was higher than share of litter effect and mostly lower than share of direct genetic effect.",
journal = "International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia",
title = "Estimation of the Variance Components of the Sow Litter Size Traits Using Reml Method - Repeatability Model",
url = "https://hdl.handle.net/21.15107/rcub_agrospace_5542"
}

Radojković, D., Petrović, M., Parunović, N., Radović, C., Radović, L., Popovac, M., Savić, R.,& Gogić, M.. (2014). Estimation of the Variance Components of the Sow Litter Size Traits Using Reml Method - Repeatability Model. in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia.
https://hdl.handle.net/21.15107/rcub_agrospace_5542

Radojković D, Petrović M, Parunović N, Radović C, Radović L, Popovac M, Savić R, Gogić M. Estimation of the Variance Components of the Sow Litter Size Traits Using Reml Method - Repeatability Model. in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia. 2014;.
https://hdl.handle.net/21.15107/rcub_agrospace_5542 .

Radojković, Dragan, Petrović, M, Parunović, N, Radović, C, Radović, L, Popovac, Mladen, Savić, Radomir, Gogić, M, "Estimation of the Variance Components of the Sow Litter Size Traits Using Reml Method - Repeatability Model" in International Symposium on Animal Science 2014, 23-25th September 2014, Belgrade, Serbia (2014),
https://hdl.handle.net/21.15107/rcub_agrospace_5542 .